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Program for AFP/CAFA 2011 July 15-16 2011, Vienna
|
Time |
Speaker |
Title |
|
Day 1 |
|
|
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9:00-9:10 |
|
Opening remarks |
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9:10-9:50 |
Keynote: Janet Thornton |
Enzyme Reactions: Automated approaches for Classification and Searching |
|
9:50-10:10 |
Yiannis Kourmpetis |
Network based protein function prediction using Bayesian Markov Random Fields |
|
10:10-10:30 |
Tobias Hamp |
Nearest-Neighbor Approaches to Predict Protein Function by Homology Inference Alone |
|
10:30-11:00 |
Break |
|
|
11:00-11:20 |
Jesse Gillis |
A Gene Function Prediction Competition Post-mortem |
|
11:20-11:40 |
Meghana Chitale |
Function Prediction for Systems Level: Functional Coherence of Protein Groups and Identification of Missing Genes |
|
11:40-12:00 |
Yanay Ofran |
Conservation of Protein Function is Reflected More by Short Sequence Motifs than by Sequence Similarity |
|
12:00-12:20 |
Iddo Friedberg |
Context based function prediction in metagenomic data |
|
12:20-1:30 |
Lunch |
|
|
1:30-2:10 |
Keynote: David Jones |
Protein function prediction by massive integration of evolutionary analyses and multiple data sources |
|
2:10-2:50 |
Lightning talks |
Hai Fang, Aaron Wong,Jeffrey Yunes, Mary Jo Ondrechen |
|
2:50-4:00 |
Break & Poster Session |
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4:00-4:20 |
Mark Wass |
3DLigandSite: Predicting ligand binding sites using similar structures |
|
4:20-4:40 |
Patrik Koskinen |
PANNZER - A high- throughput tool for functional annotation |
|
4:40-5:00 |
Olivier Lichtarge |
Integrative Approaches to Function Prediction: Case Controls |
|
5:00-5:40 |
Keynote: Amos Bairoch |
TBA |
|
Time |
Speaker |
Title |
|
Day 2 |
|
|
|
8:30-8:50 |
Iddo Friedberg |
Introduction to CAFA |
|
8:50-9:15 |
Predrag Radivojac |
CAFA Assessment I |
|
9:15-9:40 |
Sean Mooney |
CAFA Assessment II |
|
9:40-10:00 |
Artem Sokolov |
Combining Heterogeneous Data Sources for Protein Function Prediction |
|
10:00-10:20 |
Christine Orengo |
TBA |
|
10:20-10:45 |
Break |
|
|
10:45-11:15 |
Lightning talks: Hagit Shatkay, Michael Tress, Shaneka Simmons |
|
|
11:15-1:30 |
Lunch and poster session |
|
|
1:30-2:20 |
Panel Discussion "The future of CAFA" Amos Bairoch, Steven E. Brenner, Simon Kasif and Yanay Ofran |
|
|
2:20-2:40 |
CAFA talk |
TBA |
|
2:40-3:00 |
CAFA talk |
TBA |
|
3:00-3:20 |
Maria Martin |
Automatic Annotation in UniProtKB |
|
3:20-4:00 |
Break |
|
|
4:00-4:20 |
Nemanja Djuric |
Protein Function Prediction by Integrating Different Data Sources |
|
4:20-4:40 |
Trevor Newell |
Protein Sequence Annotation Using Classificatory Decomposition |
|
4:40-5:00 |
Wyatt Clark |
Testing the ortholog conjecture with comparative functional genomic data from mammals |
|
5:00-5:20 |
Ian Holmes |
Continuous-time Markov chains for evolution of ontology term associations |
|
5:20-5:30 |
CAFA AWARDS |
|
|
5:30-6:10 |
Keynote: Simon Kasif |
Computational Bridges to Experiments (COMBREX): an Active Learning Perspective |